# R for Neuroscientists

Blogs & Slides Only

# fNIRS & NIRS

# fMRi, MRI, & qMRI

## Visualization of MRI data in R

Added Sunday Dec 13th, 2020

**What is this?**

**Description from site:** In this blog post I present some functions which I was able to find for MRI visualization in R, and which I found to be very useful. All functions presented below presuppose an image in the NIfTI data format as input, and are very user-friendly.

Uses the ** oro.nifti** package

- Link to blog here: https://www.alexejgossmann.com/MRI_viz/
- Same blog difference place: https://www.r-bloggers.com/2017/01/visualization-of-mri-data-in-r/

## Processing fMRI Data in R

Added Sunday Dec 13th, 2020

**What is this?**

Slides created by John Muschelli for processing fMRI Data in R.

- Link to slides here: https://johnmuschelli.com/Neuroimaging_in_R/fmri_proc.html#1
- Link to repo here: https://github.com/muschellij2/Neuroimaging_in_R

# EEG

# All Neuro

## neuropointillist

Added Sunday Dec 13th, 2020

**What is this?**

Description from site: Flexible modeling of neuroimaging data in R, point by point

- Link to site: http://ibic.github.io/neuropointillist/
- Content:

## Neuroimaging Analysis within R

Added Sunday Dec 13th, 2020

**What is this?**

Series of slides with code for course on Neuroimaging Analysis: All the PDF slides are located in a zip file here.

- Introduction and R Slides, PDF Slides, R Code, Source
- General R (not covered at ENAR) Slides, PDF Slides, R Code, Source
- Imaging Packages in R Slides PDF Slides, R Code, Source
- Visualization of Images Slides PDF Slides, R Code, Source
- Inhomogeneity Correction Slides, PDF Slides, R Code Source
- Brain Extraction/Segmentation Slides, PDF Slides, R Code, Source
- Image Registration Slides PDF Slides, R Code, Source
- Tissue-Class Segmentation Slides PDF Slides, R Code, Source
- Intensity Normalization Slides, PDF Slides, R Code, Source
- Segmentation of MS Lesions Slides, PDF Slides, R Code, Source
- Image Harmonization Slides PDF Slides, R Code, Source
- Starting with Raw (DICOM) Data (not covered) Slides, PDF Slides, R Code, Source

- Link to site here: https://johnmuschelli.com/imaging_in_r/